author | Dremov Kirill (Nokia-D-MSW/Tampere) <kirill.dremov@nokia.com> |
Mon, 04 Oct 2010 01:32:07 +0300 | |
changeset 2 | 303757a437d3 |
parent 0 | 4f2f89ce4247 |
permissions | -rw-r--r-- |
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// The Great Computer Language Shootout |
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// http://shootout.alioth.debian.org |
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// |
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// Contributed by Ian Osgood |
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var last = 42, A = 3877, C = 29573, M = 139968; |
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function rand(max) { |
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last = (last * A + C) % M; |
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return max * last / M; |
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} |
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var ALU = |
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"GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGG" + |
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"GAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGA" + |
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"CCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAAT" + |
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"ACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCA" + |
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"GCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGG" + |
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"AGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCC" + |
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"AGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA"; |
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var IUB = { |
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a:0.27, c:0.12, g:0.12, t:0.27, |
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B:0.02, D:0.02, H:0.02, K:0.02, |
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M:0.02, N:0.02, R:0.02, S:0.02, |
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V:0.02, W:0.02, Y:0.02 |
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} |
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|
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var HomoSap = { |
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a: 0.3029549426680, |
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c: 0.1979883004921, |
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g: 0.1975473066391, |
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t: 0.3015094502008 |
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} |
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function makeCumulative(table) { |
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var last = null; |
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for (var c in table) { |
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if (last) table[c] += table[last]; |
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last = c; |
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} |
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} |
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function fastaRepeat(n, seq) { |
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var seqi = 0, lenOut = 60; |
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while (n>0) { |
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if (n<lenOut) lenOut = n; |
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if (seqi + lenOut < seq.length) { |
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ret = seq.substring(seqi, seqi+lenOut); |
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seqi += lenOut; |
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} else { |
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var s = seq.substring(seqi); |
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seqi = lenOut - s.length; |
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ret = s + seq.substring(0, seqi); |
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} |
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n -= lenOut; |
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} |
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} |
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function fastaRandom(n, table) { |
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var line = new Array(60); |
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makeCumulative(table); |
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while (n>0) { |
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if (n<line.length) line = new Array(n); |
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for (var i=0; i<line.length; i++) { |
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var r = rand(1); |
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for (var c in table) { |
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if (r < table[c]) { |
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line[i] = c; |
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break; |
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} |
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} |
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} |
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ret = line.join(''); |
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n -= line.length; |
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} |
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} |
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var ret; |
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var count = 7; |
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ret = fastaRepeat(2*count*100000, ALU); |
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ret = fastaRandom(3*count*1000, IUB); |
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ret = fastaRandom(5*count*1000, HomoSap); |
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