Update run-qmake template to run Orbit configure.py first, followed by mkspec export. This should allow hb SYSTEMINCLUDEs for subsequently processed .pro files.
TRUST LEVEL 5 MACHINE v800026.*
TRUST LEVEL 5 MACHINE v800005.*
TRUST LEVEL 5 MACHINE sym-build01.*
TRUST LEVEL 5 MACHINE sym-build02.*
TRUST LEVEL 5 MACHINE lon-engbuild87.*
TRUST LEVEL 5 MACHINE lon-engbuild89.*
TRUST LEVEL 5 MACHINE c100725.*
TRUST LEVEL 5 MACHINE c100726.*
TRUST LEVEL 5 MACHINE UK-BRENDAND.*
TRUST LEVEL 5 MACHINE v800017.*