Update run-qmake template to run Orbit configure.py first, followed by mkspec export. This should allow hb SYSTEMINCLUDEs for subsequently processed .pro files.
com.nokia.ant
com.nokia.ant.filters
com.nokia.ant.listener
com.nokia.ant.listener.internaldata
com.nokia.ant.taskdefs
com.nokia.ant.taskdefs.ccm.commands
com.nokia.ant.types
com.nokia.ant.types.ccm
com.nokia.ant.types.imaker
com.nokia.ant.util
com.nokia.config
com.nokia.fmpp
com.nokia.tools
com.nokia.tools.cmt
com.nokia.tools.configuration
com.nokia.tools.sbs